Listar por autor "Pérez-Acle, Tomás"
Mostrando ítems 1-3 de 3
-
RIP-MD: a tool to study residue interaction networks in protein molecular dynamics
Contreras-Riquelme, Sebastián [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Network Biol Lab, Santiago, Chile]; Martín, Alberto J. M. [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Network Biol Lab, Santiago, Chile]; Garate, José-Antonio; Pérez-Acle, Tomás (PEERJ INC, 2018)Protein structure is not static; residues undergo conformational rearrangements and, in doing so, create, stabilize or break non-covalent interactions. Molecular dynamics (MD) is a technique used to simulate these movements ... -
Rule-Based Models and Applications in Biology
Bustos, Álvaro; Fuenzalida, Ignacio; Santibáñez, Rodrigo; Pérez-Acle, Tomás; Martin, Alberto J M [Centro de Genómica y Bioinformática, Facultad de Ciencias, Universidad Mayor, Chile] (Humana Press, 2018-11-13)Complex systems are governed by dynamic processes whose underlying causal rules are difficult to unravel. However, chemical reactions, molecular interactions, and many other complex systems can be usually represented as ... -
Stochastic simulation of multiscale complex systems with PISKaS: A rule-based approach
Martín, Alberto J. M. [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Santiago, Chile]; Pérez-Acle, Tomás; Fuenzalida, Ignacio; Santibañez, Rodrigo; Avaria, Rodrigo; Bernardin, Alejandro; Bustos, Alvaro M.; Garrido, Daniel; Dushoff, Jonathan; Liu, James H. (ACADEMIC PRESS INC ELSEVIER SCIENCE, 2018)Computational simulation is a widely employed methodology to study the dynamic behavior of complex systems. Although common approaches are based either on ordinary differential equations or stochastic differential equations, ...