Listar Centro de Investigación en Genómica y Bioinformática (CGB) por autor "Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Chile"
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A Revised View of the LSU Gene Family: New Functions in Plant Stress Responses and Phytohormone Signaling
Canales, Javier; Arenas-M, Anita; Medina, Joaquín; Vidal, Elena A. [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Chile] (MDPI, 2023-02)LSUs (RESPONSE TO LOW SULFUR) are plant-specific proteins of unknown function that were initially identified during transcriptomic studies of the sulfur deficiency response in Arabidopsis. Recent functional studies have ... -
Bacterially produced metabolites protect C. elegans neurons from degeneration
Urrutia, Arles; García-Angulo, Víctor A. [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Chile]; Fuentes, Andres [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Chile]; Caneo, Mauricio; Legue, Marcela [Univ Mayor, Fac Ciencias, Ctr Genom Integrat, Chile]; Urquiza, Sebastian [Univ Mayor, Fac Ciencias, Ctr Genom Integrat, Chile]; Delgado, Scarlett E. [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Chile]; Ugalde, Juan [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Chile]; Burdisso, Paula; Calixto, Andrea [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Chile] (Public Library of Science, 2020-03)Caenorhabditis elegans and its cognate bacterial diet comprise a reliable, widespread model to study diet and microbiota effects on host physiology. Nonetheless, how diet influences the rate at which neurons die remains ... -
Deciphering the functional diversity of DNA-binding transcription factors in Bacteria and Archaea organisms
Flores-Bautista, Emanuel; Hernández-Guerrero, Rafael; Huerta-Saquero, Alejandro; Tenorio-Salgado, Silvia; Rivera-Gómez, Nancy; Romero, Alba; Antonio Ibarra, José; Pérez-Rueda, Ernesto [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Chile] (Public Library of Science, 2020-08)DNA-binding Transcription Factors (TFs) play a central role in regulation of gene expression in prokaryotic organisms, and similarities at the sequence level have been reported. These proteins are predicted with different ... -
Dormant but Active: Chilling Accumulation Modulates the Epigenome and Transcriptome ofPrunus aviumDuring Bud Dormancy
Rothkegel, Karin; Sandoval, Paula; Soto, Esteban; Ulloa, Lissette; Riveros, Anibal; Lillo-Carmona, Victoria; Caceres-Molina, Javier; Almeida, Andrea Miyasaka [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Chile]; Meneses, Claudio (Frontiers Media S.A., 2020-07)Temperate deciduous fruit tree species like sweet cherry (Prunus avium) require long periods of low temperatures to trigger dormancy release and flowering. In addition to sequence-based genetic diversity, epigenetic variation ... -
Gene Regulatory Networks of Penicillium echinulatum 2HH and Penicillium oxalicum 114-2 Inferred by a Computational Biology Approach
Lenz, Alexandre Rafael; Galán-Vásquez, Edgardo; Balbinot, Eduardo; de Abreu, Fernanda Pessi; Souza de Oliveira, Nikael; da Rosa, Leticia Osorio; de Avila e Silva, Scheila; Camassola, Marli; Dillon, Aldo Jose Pinheiro; Pérez-Rueda, Ernesto [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Chile] (Frontiers Media S.A., 2020-10)Penicillium echinulatum 2HH and Penicillium oxalicum 114-2 are well-known cellulase fungal producers. However, few studies addressing global mechanisms for gene regulation of these two important organisms are available so ... -
Influence of mobile genetic elements and insertion sequences in long- and short-term adaptive processes of Acidithiobacillus ferrooxidans strains
Moya-Beltrán, Ana; Gajdosik, Martin; Rojas-Villalobos, Camila; Beard, Simon; Mandl, Martin; Silva-García, Danitza [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Chile]; Johnson, D. Barrie; Ramírez, Pablo; Quatrini, Raquel; Kucera, Jiri (NATURE PORTFOLIO, 2023-07-05)The recent revision of the Acidithiobacillia class using genomic taxonomy methods has shown that, in addition to the existence of previously unrecognized genera and species, some species of the class harbor levels of ... -
Metabolite Fruit Profile Is Altered in Response to Source-Sink Imbalance and Can Be Used as an Early Predictor of Fruit Quality in Nectarine
Covarrubias, María Paz; Lillo-Carmona, Victoria; Melet, Lorena [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Huechuraba, Chile]; Benedetto, Gianfranco; Andrade, Diego; Maucourt, Mickael; Deborde, Catherine; Fuentealba, Claudia; Moing, Annick; Valenzuela, Maria Luisa; Pedreschi, Romina; Almeida, Andrea Miyasaka [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Chile] (FRONTIERS MEDIA SA, 2021-01-08)Peaches and nectarines [Prunus persica (L.) Batsch] are among the most exported fresh fruit from Chile to the Northern Hemisphere. Fruit acceptance by final consumers is defined by quality parameters such as the size, ... -
Multiplex TaqMan Real-Time PCR Assay for Sensitive Detection of Two Weevil Species (Coleoptera: Curculionidae)
Aguirre, Carlos; Olivares, Natalia; Hinrichsen, Patricio; Sanchez, Evelyn [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Chile] (OXFORD UNIV PRESS INC, 2021-06-04)Rapid and cost-efficient identification of Naupactus species is becoming a key process for the exportation of citrus fruit from Chile and other countries, considering the quarantine regulations for some species of the ... -
Nitrate in 2020: Thirty Years from Transport to Signaling Networks
Vidal, Elena A. [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Chile]; Alvarez, Jose M. [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Chile]; Araus, Viviana; Riveras, Eleodoro; Brooks, Matthew D.; Krouk, Gabriel; Ruffel, Sandrine; Lejay, Laurence; Crawford, Nigel M.; Coruzzi, Gloria M.; Gutierrez, Rodrigo A. (American Society of Plant Biologists, 2020-07)Nitrogen (N) is an essential macronutrient for plants and a major limiting factor for plant growth and crop production. Nitrate is the main source of N available to plants in agricultural soils and in many natural environments. ... -
Non-Specific Antibodies Induce Lysosomal Activation in Atlantic Salmon Macrophages Infected by Piscirickettsia salmonis
Pérez-Stuardo, Diego [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Chile]; Espinoza, Allison [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Chile]; Tapia, Sebastián [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Chile]; Morales-Reyes, Jonathan; Barrientos, Claudio; Vallejos-Vidal, Eva; Sandino, Ana M.; Spencer, Eugenio; Toro-Ascuy, Daniela; Rivas-Pardo, J. Andrés [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Chile]; Reyes-López, Felipe E.; Reyes-Cerpa, Sebastián [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Chile] (Frontiers Media S.A., 2020-11)Piscirickettsia salmonis, an aggressive intracellular pathogen, is the etiological agent of salmonid rickettsial septicemia (SRS). This is a chronic multisystemic disease that generates high mortalities and large losses ... -
Outline of Fungi and fungus-like taxa
Wijayawardene, NN; Hyde, KD; Al-Ani, LKT; Tedersoo, L.; Haelewaters, D; Rajeshkumar, KC; Zhao, RL; Aptroot, A; Leontyev, DV; Saxena, RK; Tokarev, YS; Dai, DQ; Letcher, PM; Stephenson, SL; Ertz, D; Lumbsch, HT; Kukwa, M; Issi, IV; Phillips, AJL; Selbmann, L; Pfliegler, WP; Horvath, E; Bensch, K; Kirk, PM; Kolarikova, K; Raja, HA; Radek, R; Papp, V; Dima, B; Ma, J; Malosso, E; Takamatsu, S; Rambold, G; Gannibal, PB; Triebel, D; Gautam, AK; Avasthi, S; Suetrong, S; Timdal, E; Fryar, SC; Delgado, G; Reblova, M; Doilom, M; Dolatabadi, S; Pawlowska, JZ; Humber, RA; Kodsueb, R; Sanchez-Castro, I; Goto, BT; Silva, DKA; de Souza, FA; Oehl, FR; da Silva, GA; Silva, IR; Blaszkowski, J; Jobim, K; Maia, LC; Barbosa, FR; Fiuza, PO; Divakar, PK; Shenoy, BD; Castaneda-Ruiz, RF; Somrithipol, S; Lateef, AA; Karunarathna, SC; Tibpromma, S; Mortimer, PE; Wanasinghe, DN; Phookamsak, R; Xu, J; Wang, Y; Tian, F; Alvarado, P; Li, DW; Kusan, I; Matocec, N; Mesic, A; Tkalcec, Z; Maharachchikumbura, SSN; Papizadeh, M; Heredia, G; Wartchow, F; Bakhshi, M; Boehm, E; Youssef, N; Hustad, VP; Lawrey, JD; Santiago, ALCMA; Bezerra, JDP; Souza-Motta, CM; Firmino, AL; Tian, Q; Houbraken, J; Hongsanan, S; Tanaka, K; Dissanayake, AJ; Monteiro, JS; Grossart, HP; Suija, A; Weerakoon, G; Etayo, J; Tsurykau, A; Vazquez, V; Mungai, P ; Damm, U; Li, QR; Zhang, H; Boonmee, S; Lu, YZ; Becerra, AG; Kendrick, B; Brearley, FQ; Motiejunaite, J; Sharma, B; Khare, R; Gaikwad, S; Wijesundara, DSA; Tang, LZ; He, MQ; Flakus, A; Rodriguez-Flakus, P; Zhurbenko, MP; McKenzie, EHC; Stadler, M; Bhat, DJ; Liu, JK; Raza, M; Jeewon, R; Nassonova, ES; Prieto, M; Jayalal, RGU; Erdogdu, M; Yurkov, A; Schnittler, M; Shchepin, ON; Novozhilov, YK; Silva, AGS; Gentekaki, E; Liu, P; Cavender, JC; Kang, Y; Mohammad, S; Zhang, LF; Xu, RF; Li, YM; Dayarathne, MC; Ekanayaka, AH; Wen, TC; Deng, CY; Pereira, OL; Navathe, S; Hawksworth, DL; Fan, XL; Dissanayake, LS; Kuhnert, E; Thines, M; Madrid, H. [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Chile] (Guizhou Key Laboratory of Agricultural Biotechnology, 2020)This article provides an outline of the classification of the kingdom Fungi (including fossil fungi. i.e. dispersed spores, mycelia, sporophores, mycorrhizas). We treat 19 phyla of fungi. These are Aphelidiomycota, Ascomycota, ... -
TGA class II transcription factors are essential to restrict oxidative stress in response to UV-B stress in Arabidopsis
Herrera-Vásquez, Ariel; Fonseca, Alejandro; Ugalde, José Manuel; Lamig, Liliana; Seguel, Aldo; Moyano, Tomas C.; Gutiérrez, Rodrigo A.; Salinas, Paula; Vidal, Elena A. [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Chile]; Holuigue, Loreto (OXFORD UNIV PRESS, 2021-02-27)Plants possess a robust metabolic network for sensing and controlling reactive oxygen species (ROS) levels upon stress conditions. Evidence shown here supports a role for TGA class II transcription factors as critical ... -
The Microbial Composition in Circumneutral Thermal Springs from Chignahuapan, Puebla, Mexico Reveals the Presence of Particular Sulfur-Oxidizing Bacterial and Viral Communities
Castelan-Sánchez, Hugo Gildardo; Meza-Rodríguez, Pablo M.; Carrillo, Erika; Ríos-Vázquez, David I.; Linan-Torres, Arturo; Batista-Garcia, Ramón Alberto; Pérez-Rueda, Ernesto [Univ Mayor, Fac Ciencias, Ctr Genom & Bioinformat, Chile]; Rojas-Ruíz, Norma Elena; Dávila-Ramos, Sonia (MDPI AG, 2020-11)Terrestrial thermal springs are widely distributed globally, and these springs harbor a broad diversity of organisms of biotechnological interest. In Mexico, few studies exploring this kind of environment have been described. ...