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Development of a Multiplex PCR Assay for Genotyping the Fish Pathogen Piscirickettsia salmonis Through Comparative Genomics
(FRONTIERS MEDIA SA, 2021-07-11)
Piscirickettsia salmonis is a bacterial pathogen that severely impact the aquaculture in several countries as Canada, Scotland, Ireland, Norway, and Chile. It provokes Piscirickettsiosis outbreaks in the marine phase of ...
A decade later, reviewing floating marine debris in Northern Chilean Patagonia
(PERGAMON-ELSEVIER SCIENCE LTD, 2021-07-07)
Floating marine debris (FMD) were abundantly reported in the Northern Chilean Patagonia in 2009 where seabased activities (mussel and salmon aquaculture) are responsible for most of them. Identifying the sources of FMD is ...
ConnecTF: A platform to integrate transcription factor-gene interactions and validate regulatory networks
(OXFORD UNIV PRESS INC, 2021-04-28)
Deciphering gene regulatory networks (GRNs) is both a promise and challenge of systems biology. The promise lies in identifying key transcription factors (TFs) that enable an organism to react to changes in its environment. ...
Filtering of Data-Driven Gene Regulatory Networks Using Drosophila melanogaster as a Case Study
(FRONTIERS MEDIA SA, 2021-07-28)
Gene Regulatory Networks (GRNs) allow the study of regulation of gene expression of whole genomes. Among the most relevant advantages of using networks to depict this key process, there is the visual representation of large ...
A Revised View of the LSU Gene Family: New Functions in Plant Stress Responses and Phytohormone Signaling
(MDPI, 2023-02)
LSUs (RESPONSE TO LOW SULFUR) are plant-specific proteins of unknown function that were initially identified during transcriptomic studies of the sulfur deficiency response in Arabidopsis. Recent functional studies have ...
Comparative genomics sheds light on transcription factor-mediated regulation in the extreme acidophilic Acidithiobacillia representatives
(Elsevier Masson s.r.l., 2024-01)
Extreme acidophiles thrive in acidic environments, confront a multitude of challenges, and demonstrate remarkable adaptability in their metabolism to cope with the ever-changing environmental fluctuations, which encompass ...
Whole-exome sequencing of oral epithelial dysplasia samples reveals an association with new genes
(SOCIEDADE BRASILEIRA DE PESQUISA ODONTOLOGICA, 2023-03-23)
The genetic basis of oral epithelial (OED) is unknown, and there is no reliable method for evaluating the risk of malignant transformation. Somatic mutations are responsible for the transformation of dysplastic mucosa to ...
Influence of mobile genetic elements and insertion sequences in long- and short-term adaptive processes of Acidithiobacillus ferrooxidans strains
(NATURE PORTFOLIO, 2023-07-05)
The recent revision of the Acidithiobacillia class using genomic taxonomy methods has shown that, in addition to the existence of previously unrecognized genera and species, some species of the class harbor levels of ...
Phylogenomic analysis of the Porphyromonas gingivalis-Porphyromonas gulae duo: approaches to the origin of periodontitis
(FRONTIERS MEDIA SA, 2023-07-19)
Porphyromonas gingivalis is an oral human pathogen associated with the onset and progression of periodontitis, a chronic immune-inflammatory disease characterized by the destruction of the teeth-supporting tissue. P. ...
Insights into early evolutionary adaptations of the Akkermansia genus to the vertebrate gut
(FRONTIERS MEDIA SA, 2023-09-14)
Akkermansia, a relevant mucin degrader from the vertebrate gut microbiota, is a member of the deeply branched Verrucomicrobiota, as well as the only known member of this phylum to be described as inhabitants of the gut. ...