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Rule-Based Models and Applications in Biology
(Humana Press, 2018-11-13)
Complex systems are governed by dynamic processes whose underlying causal rules are difficult to unravel. However, chemical reactions, molecular interactions, and many other complex systems can be usually represented as ...
RIP-MD: a tool to study residue interaction networks in protein molecular dynamics
(PEERJ INC, 2018)
Protein structure is not static; residues undergo conformational rearrangements and, in doing so, create, stabilize or break non-covalent interactions. Molecular dynamics (MD) is a technique used to simulate these movements ...